miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|218827929|gb|FC902541.1|FC902541 ACGAGTATGACGGAGGCAGAGGCGAAGCCACGACGGTTGAGAGGTCACAAGGCCACTGCCACGTGCTGCATAGCCTCACG
TGACCGCCCTGGCTTTGTTGCCACTTCTGGGGAGGATGGTTGCGTTTGCTGGTTTGATTTGAGAAGCAAAGACGTGCAGC
TTGTCACTGATGTTGGAAATGGACCTGTTACTTCACTTTGTTTCAAGTCAGGGAATGAAGACATTATCTACGTTTCCTCG
GGAAAGGAAGTCAAATCTTTTGATGTGCATATGCCTGCATCGTGGAGGCCATTAGAGAGCTACAACTATAACAAAGAGGA
GATAAATCAGATCGTGTGCAATCCTAAGTCATCTTTTCTTGCTTGCGCAGATGATGGTGGTGATGTTAAGATCATTGATA
TTCGCCAGCATTGCCTTTATAAAACACTGAGAGCTGGCCATTCAAGTATCTGTAGCAGTGTGCAATTCATACCCTGGAAA
CCTTGGGAAGTCATTTCTGGAGGTCTGGATTCGAAGCTTGTCATGTGGGACTTCTCCAAAGGGCGTCCAAACAAGATTGT
GAATTTTGGCTTACCTGAAAACAATGGTAATTCTGGGCAATGCTATAACCCTGCTTTTGTGCATGCAATAGCAATTCCAG
ATGCTGATATGTTAGACAAAACAAAAAAAATATGTGTCGTTGCTAAGGGTGATGGTGTTGTTGATGTGATCAATATTGAA
TCAGAACTTAATATAAGTAGGTCAAAAAGTACCACAAAACCGCTGAAGGGCTCTCAATC




Most similar to sp|Q9DB94|WDR53_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9DB94|WDR53_MOUSE WD repeat_field-containing protein 53 OS=Mus
           musculus GN=Wdr53 PE=2 SV=1
          Length = 358

 Score =  104 bits (259), Expect = 8e-22
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 5/203 (2%)
 Frame = +1

Query: 43  GHKATATCCIASRDRPGFVATSGEDGCVCWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED 222
           GH ++  C  A++D  G VA+ GE G +  +      +  +   G   VTS+ F +    
Sbjct: 8   GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPT 65

Query: 223 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 402
            +Y S G+ +   DV        L+ ++ N+EEIN +  N   S LA ADD G +KI+D+
Sbjct: 66  KLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDL 123

Query: 403 RQHCLYKTLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 582
            +  + ++L+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N    E 
Sbjct: 124 EKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDET 182

Query: 583 NGNS-----GQCYNPAFVHAIAI 636
                    G+  NPA  H++++
Sbjct: 183 EETEGPQTPGRLLNPALAHSVSV 205